"'Gene Wijffels'"@
<Gene.Wijffels@li.csiro.au>
Subject: RE: disulphide bond prediction
Date: Mon, 28 May 2001 10:00:51 +1000
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Dear Gene,
I'm not aware of any web based software that is smart enough for what you
want but the BioLynx software (part of MassLynx suite of tools by Micromass)
provides this functionality. Unfortunately, you either have to own or have
access to one of their instruments. Hope this helps
-----------------------------------------------------------
Eugene Kapp
Joint Protein Structure Laboratory
Ludwig Institute for Cancer Research
PO Royal Melbourne Hospital
Parkville VIC 3050
Australia
Telephone +61 3 9341 3155
Fax +61 3 9341 3104
Email : eugene.kapp@ludwig.edu.au
WWW: http://www.ludwig.edu.au
-----------------------------------------------------------
> ----------
> From: Gene Wijffels[SMTP:Gene.Wijffels@li.csiro.au]
> Sent: Thursday, May 24, 2001 8:10 PM
> To: Recipients of ABRF List
> Subject: disulphide bond prediction
>
> Hi ABRFers,
> I am trying to use protein digests and LC-MS to determine the disulphide
> bond arrangements within a couple of smallish knotty proteins.
>
> Does someone know of a web site that possesses a program that can
> predict/calculate/indicate the probable disulphide bonds of a (obviously
> non-reduced) protein given the mass of peptides from a digest, the
> protein's primary sequence, the endoproteinase specificity (and the buffer
> conditions of the digest if relevant)?
>
> I am aware of sites and programs that predict the mass of fragments and
> products of partial digests, but I need something smarter.
>
> Thanks heaps in advance,
> Gene
> Gene Wijffels
> CSIRO Livestock Industries
>
> Phone: (07) 3346 2510/14
> FAX: (07) 3346 2509
>
> Please note new postal address:
>
> CSIRO Livestock Industries,
> Level 3 Gehrmann Laboratories,
> Research Road
> University of Queensland
> St Lucia Qld 4072
>
>
> street address: Level 7
> Gehrmann Laboratories
> Research Road
> University of Queensland 4072
>
>
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