Re: MS: plus 28 Da

Ioannis Papayannopoulos (iap@tp.net)
Sat, 01 Aug 1998 09:11:26 -0400

Mark,
I have in the past seen formylation of proteins occuring under CNBR
cleavage conditions, and it seems to be related to the number of Lys side
chains present. What we did was to carry out the digest using Tfa rather
than formic acid, which did not give any adducts, although, I must say, in
my hinds the CNBr cleavage was not as complete in Tfa as in formic acid.
By the way, the peak at ~22 u above the peak due to the unmodified molecule
is probably the sodium adduct, the rest do appear to be due to formylation.
Regards,
Ioannis Papayannopoulos

At 05:05 PM 7/31/98 -0500, Mark Lively wrote:
>Fellow protein chemists,
>
> We have produced a recombinant protein of approximately 16,000 Da as a
fusion protein with maltose binding protein. The desired protein is basic
with 15 Lys and has no Met's. We have used CNBr cleavage in formic acid to
cleave the fusion protein and then isolated the desired 16 k product by
reverse phase hplc. The purified product was identified by amino acid
sequence analysis.
>
> Electrospray ionization ms of the purified product yields a family of
peaks starting very close to the target mass but increasing in mass by
approximately 28 Da per "adduct". The actual m/z values increase by 21.88,
27.75, 29.0, 27.5, 26.2, & 25. The principal ion is at approximately the
expected mass plus 4 X 28 Da.
>
>QUESTION: Are we observing extensive formylation of our protein and, if
so, have others seen this result with other CNBr digests? Or is there
another explanation for the formation of these different +28 Da adducts?
>
>Thanks in advance for your help.
>Mark Lively
>
>