re Database Searches

Paul Jedrzejewski (pjedrzej@lynx.dac.neu.edu)
Fri, 21 Aug 1998 14:36:36 -0400

>Can anyone give any suggestions about a database search engine that will
>determine the identity of an unknown protein, using both masses and
>snipets of sequence from peptides generated from an enzymatic digest of
>that protein?
>Karen L. Lee
>Research Scientist
>Genzyme Corporation
>1 Mountain Rd.
>Framingham, MA 01701-9322
>Phone: (508) 872-8400
>Fax: (508) 872-9080
>E-Mail: KLee@Genzyme.com

Karen,

You can try the following peptide mapping and partical sequence programs:

HTTP://prospector.ucsf.edu/mshome.htm

http://prowl.rockefeller.edu/cgi-bin/ProFound

http://www.mann.embl-heidelberg.de/Services/PeptideSearch/PeptideSearchIntr
o.html

Paul

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Paul T. Jedrzejewski, Ph.D.
Barnett Institute
341 Mugar Bldg.
Northeastern University
360 Huntington Ave.
Boston, MA 02115

phone: 617.373.2857
fax: 617.373.2855 http://www.barnett.neu.edu
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