Richard Cook wrote:
Does anyone know of any FREE programs or FREE WWW sites for predicting
hydrophobicity or antigenicity of protein sequence in addition to the Bomie
Han et al. Excel program described in Biotechniques.
Thanks,
Richard Cook
Dick,
try PROFILE at BMBBG-U Leeds (UK) web:
http://bmbsgi11.leeds.ac.uk/bmb5dp/profiles.html
It computes Eisenberg Hydropathy, Kyte & Doolittle Hydropathy, Transmembrane
Hydropathy and Solvent Accessable Surface Area.
Save the output as a postscript file and then send it to your printer. Don't
use the "view postscript" unless you have a browser plugin that will translate
it. Netscape doesn't have one.
hope this helps, Paul
Paul Morrison D830
Molecular Biology Core Facilities
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115
p_morrison@dfci.harvard.edu
http://mbcf.dfci.harvard.edu