Re: Mystery peaks from HS Procise 494

Anne Stanley (astanley@psu.edu)
Fri, 23 Apr 1999 16:26:50 -0400

I have a 477a sequencer.
2 weeks ago I had my PITC crystalize on the instrument so I
changed it to lot 9810014. Meantime ABI sent a fresh replacement
of PITC (lot 9901019).
I started having a high background right then, primarily in the area of
the "triplet of peaks" that Ken Williams reported in his message. I changed
all my reagents (not wanting to take the time to find the culprit), and
switched to the new PITC lot 9901019 that I had just received - the
background after this change, although better than with lot 9810014, is
still higher than desired (even after I KOH/MeOH cleaned all my lines...)
I suspect that Ken's culprit may be the late 98 PITC as well, and
unfortunately in my hands the 99 vintage is not much better.

Any other similar experiences out there?

Anne Stanley
Hershey Medical Center
PSU

A triplet of peaks has suddenly appeared on the HPLC chromatogram from our
HS Procise 494 that we cannot seem to rectify - any help/ideas would be
greatly appreciated. Here are the clues to this puzzle:

1. the first two peaks co-elute with Pth-Gly and Pth-Glu with the third
eluting between Pth-His and Pth-Ala. By comparison to the standards the
relative "pmol" amounts of these peaks are about 0.5 pmol (Gly), 2 pmol
(Glu) and 1 pmol (X).

2. these peaks appeared following addition of several new reagents to the
instrument - all of which have subsequently been changed again.

3. the peaks are present at the same level in all cycles and the instrument
is still sequencing normally.

4. the peaks are present also in the blank cycle.

5. the flask has been KOH washed and the column guard has been changed
without effect

6. the Pth column is 4 weeks old while this problem occurred suddenly a few
days ago

Currently, our efforts are directed towards watching a blank cycle to be
sure all wash steps are indeed occurring and then, to deleting steps from
the wash cycle program until we isolate the step or reagent causing these
peaks.

If you have seen these peaks previously and/or have any ideas on their
origin or how to more effectively diagnose the problem please respond.

Thanks very much,
Ken Williams