Two convenient programs are MS-Edman at UCSF
(http://prospector.ucsf.edu) and NewFasta3 at EBI
(http://www2.ebi.ac.uk/fasta3/newfasta3.html).
Under NewFasta3, you will need to select either FastF3 or FastS3 under
the program option. Use FastF3 for mixed peptides (i.e., total CNBr digest
data where pseudosequences can be written) or FastS3 for linked peptides
(i.e., individually determined sequences).
The data input format for FastF3 and FastS3 is:
>Name
abcd,
efgh,
ijkl
where the sequences or pseudosequences are written one per line followed by a
comma (except for the last one).
Hope that helps.
Steve
====================
Stephen Tindall, Ph.D.
Argo BioAnalytica, Inc.
====================
Subj: Database Address for multiple Edman sequences
Date: 7/16/99 2:20:40 PM Eastern Daylight Time
From: cxo@po.cwru.edu (Cheryl Lea Owens)
Sender: abrf-request@aecom.yu.edu (Association of Biomolecular
Resource Facilities)
To: abrf@aecom.yu.edu (Recipients of ABRF List)
Hello ABRFers,
At ABRF99 we were given a web database site for loading multiple
sequences(or residues) from an Edman sequence. I lost this address
recently when loading a new system on my computer. If you know/have this
address could you send it out?
Many thanks in advance,
Cheryl Owens, Manager
MBCL, Case Western Reserve University
C.L. Owens, Manager
Molecular Biology Core Laboratory
W516 SOM, Harland G. Wood Bldg.
2119 Abington Rd.
Cleveland, OH 44106