Fasta S3
Susana Linskens (linskens@qb.ffyb.uba.ar)
Fri, 13 Aug 99 08:03 GMT-0300
Dear all.
This is for those that are always up-to-date with search
algorithms.
I was trying FastaS3 because it allows to put several sequences at the time,
( for instance, sequences got from HPLC peaks ) but the results depends
on the order you load the different peptides; that means that the
program,when checking alignements, consider that the first peptide will be
before than the second in the protein to be, and the second will be before
than the third and so on. Of course, one does not know which is the real
order, so ??.
Meanwhile, another question. Is there other program, besides Blastp,
allowing more that one sequence ?
Any comments will be useful.
Thanks in advance
Susana L.
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Susana Linskens
LANAIS-PRO
Junin 956
1113 Buenos Aires - ARGENTINA
linskens@qb.ffyb.uba.ar
FAX: 54-11-4508-3652
Phone: 54-11-4508-3651
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